miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|122034179|gb|EH423044.1|EH423044 GACCAGAAATTCGGGATCATCAAGGGCACAATGACAACCACTCACTCATACACTGGTGACCAGAGGCTGTTGGATGCAAG
CCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTAAACATCGTTCCAACATCAACAGGAGCAGCTAAAGCCGTGGCTC
TTGTCCTCCCTAACCTCAAAGGAAAGCTCAACGGCATCGCATTGCGTGTGCCAACTCCCAACGTCTCGGTGGTTGACTTA
GTTGTGCAAGTCTCCAAGAAGACTTTTGCTGAAGAAGTCAACGCTGCGTTCAGGGATGCAGCTGCGAACGAGCTTAAAGG
TATACTCGATGTCTGCGATGAGCCTCTTGTCTCTGTCGACTTCAGGTGCTCTGATGTGTCATCCACCATTGATTCTTCCC
TCACAATGGTTATGGGAGATGATATGGTTAAAGTGATTGCTTGGTATGATAATGAATGGGGCTACTCTCAGAGAGTTGTT
GATTTGGCTGACATTGTTGCCAATAACTGGAAGTGAAGATGTCTGCTCCATTTTTTTTTATACAGTTATGTGATTCGGAA
TGTAGAATTGTAGTTCCCGAGTTTATGTATTTGTGCTCTACAATTTTATAGTAATAAACTTTATTCAAAC




Most similar to sp|P09672|G3PA_SINAL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P09672|G3PA_SINAL Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2
           SV=1
          Length = 233

 Score =  273 bits (699), Expect = 5e-73
 Identities = 141/171 (82%), Positives = 141/171 (82%)
 Frame = +1

Query: 1   DQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVALVLPNLK 180
           DQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAVALVLPNLK
Sbjct: 63  DQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLK 122

Query: 181 GKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRDAAANELKGILDVCDEPLVSVD 360
           GKLNGIALRVPTPN          SKKTFAEEVNAAFRDAA  ELKGILDVCDEPLVSVD
Sbjct: 123 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVD 182

Query: 361 FRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 513
           FRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 183 FRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233